Scaffold Ga0207892_1026178

Overview

Basic Information

• Taxon OID: 3300025050
• Scaffold ID: Ga0207892_1026178
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 662
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5673
  • Long. (^o): -138.6705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F036732	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207892_10261781	F036732	N/A	LVELITVKTGTNTRQEGIVNLTPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ
Ga0207892_10261782	F000730	AGG	LVNEFIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQKAQGVKDEQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI