NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207892_1015069

Scaffold Ga0207892_1015069


Overview

Basic Information
Taxon OID3300025050 Open in IMG/M
Scaffold IDGa0207892_1015069 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)837
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5673Long. (o)-138.6705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034953Metagenome / Metatranscriptome173N
F067823Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0207892_10150692F034953AGGVKQTQLILLIKKYETDTPVIVTWKDAVDTYDEVTLNKLIKTDIKEVLYDTIGFFLTVKDDYVFLAYNKENDKETYKGTAMIPCSLITDIRRLTDGYGNVSENEDYPITIKGD
Ga0207892_10150693F067823AGGAMEMFMNQAWFQIAGEIVLMFTVVTGALPDRWVQKVPILGTMWPMFNWLAGNIFN

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