Scaffold Ga0207892_1007273

Overview

Basic Information

• Taxon OID: 3300025050
• Scaffold ID: Ga0207892_1007273
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5673
  • Long. (^o): -138.6705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060832	Metagenome / Metatranscriptome	132	N
F100997	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207892_10072732	F060832	AGG	MNGEMRAEVPMRMRSTTVRLKVDDRRVLAIVDYTISESGVLPMAVWIKVRPTESTLDRELRASGKMLSLLLQYGCGMKEIAETLTKDSIVGSAVNYIYKNLDSILAGEQGEKIPNLNTDPYKIKDNG
Ga0207892_10072733	F100997	N/A	TSQIAVDLDYVAPNKLKDSLENINEIFYANLLASVVKHCIESSLKLNNDIKRLIERI