NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207892_1007273

Scaffold Ga0207892_1007273


Overview

Basic Information
Taxon OID3300025050 Open in IMG/M
Scaffold IDGa0207892_1007273 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1133
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5673Long. (o)-138.6705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060832Metagenome / Metatranscriptome132N
F100997Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0207892_10072732F060832AGGMNGEMRAEVPMRMRSTTVRLKVDDRRVLAIVDYTISESGVLPMAVWIKVRPTESTLDRELRASGKMLSLLLQYGCGMKEIAETLTKDSIVGSAVNYIYKNLDSILAGEQGEKIPNLNTDPYKIKDNG
Ga0207892_10072733F100997N/ATSQIAVDLDYVAPNKLKDSLENINEIFYANLLASVVKHCIESSLKLNNDIKRLIERI

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