Scaffold Ga0207898_1009715

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207898_1009715

Scaffold Ga0207898_1009715

Overview

Basic Information
Taxon OID	3300025049 Open in IMG/M
Scaffold ID	Ga0207898_1009715 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1176
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.567	Long. (^o)	-138.6676	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004770	Metagenome	424	Y
F050480	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10097152	F050480	AGTAGG	MDKEINGHLYITNDNLKRIADALEEILRLVKKDQEQYAKKEKE
Ga0207898_10097153	F004770	AGGAG	MKAIVNFDWRKKEEPDTPAEFYIRTGLKAAGYTVTHVAVQGAWDEDKPEFAGGKWDENRLPHEEITKNEKS

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