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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025049 Open in IMG/M |
| Scaffold ID | Ga0207898_1006356 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-55 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1405 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.567 | Long. (o) | -138.6676 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F099127 | Metagenome | 103 | N |
| F103082 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207898_10063561 | F103082 | N/A | MKNPTVTRKKKRPTVKQLAGDVESLWNGMMYLDKNLTAIQRYFEEYLIMKDEVEPFMEYFEGRIEDAKK |
| Ga0207898_10063564 | F099127 | AGGA | LVDSPAYYDLTGDSDRGKLPAGNYEAIIVDMDTVTDIKCGVFIADVFKPVYRVTAGDHKNMEVTDNGIFRYKQVDGYEYESNKNWGFAKFMQILGMYSKKDGKVNLPYITKNDVSQKRVCIMVWDKSFINETSDRISYPVARAVSLINEVPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |