Scaffold Ga0207898_1004618

Overview

Basic Information

• Taxon OID: 3300025049
• Scaffold ID: Ga0207898_1004618
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1601
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003936	Metagenome / Metatranscriptome	461	Y
F012881	Metagenome / Metatranscriptome	276	Y
F041444	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10046183	F012881	GAGG	MFGKNKNAFLTTNLIVKVRKHKDQQPWFSFHNTPAIANEENARATAEKLNELVKLEPQEENWQTEYYSVPITL
Ga0207898_10046184	F003936	N/A	MIETLEIFWSAKIELRVIILAVLIGSCFWYWQDYKRKQKEKQQERLNEIKTN
Ga0207898_10046185	F041444	N/A	MKSKQIDELKEQTKILFKVVDKLEQRISTLEKVIGKLQLRLGDVVLYIDKKAEQHGS