Scaffold Ga0207898_1001993

Overview

Basic Information

• Taxon OID: 3300025049
• Scaffold ID: Ga0207898_1001993
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2222
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041252	Metagenome / Metatranscriptome	160	Y
F080485	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10019933	F041252	AGGAG	MTVEKLEMCEFLSKDYAHRASNRGLDYKKSYESYMERSQKRSSQDLLEHFSTVKQFPTVIKTNRTEEYIIRGGDDDCEDGVCKL
Ga0207898_10019936	F080485	AGGA	MTINRIIYRDQPKEATFRSLVQVFFKDNPNCEVATISITKDKPKRSDAQNRLFHTWRDIIAQEIGMSKEEAKETIKKKFHIKSTKDLEVSEFVEFLRDIDDFFSGEYLIKLPRNEDYHLAIYNVYKKP