Scaffold Ga0207898_1001211

Overview

Basic Information

• Taxon OID: 3300025049
• Scaffold ID: Ga0207898_1001211
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2680
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F054091	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10012111	F054091	AGG	MIVEEIPFFVEFVLLGIILGFGYGFTKLFLNHAKDKNKVRRTERKQEKDHNL
Ga0207898_10012112	F002100	GAGG	MSLKPALIKPTYDVSNFGTDVTLPFNSITGTGQTTLTPSTATFVQVLEDSRIPIDETTMFITDSDKMELVHAGNNTDFDESFVWTPDMSSQAYLLSFSFAVGMKVSAYTSGNFKISDVQVVCNQVGGGEGAVTVVNKIIDPGMSPMVAINKEQVAIINFSTASSVKVFDKPLTFQIKVNTDSGVGTYQTGLIPLFCYFGSAVPKTWTISSVLMHIHADLGHAFPIFRDEDNMNMLDTGIG
Ga0207898_10012114	F003270	N/A	MARKNKRRRKNKNSKHKSIKSMIRQVVNKGSAPLAFWQQLSEKDYQVLNATAEYRGLDYLGKLKVASNILTGSLTGRVLFSDQYNPSPSGQPRINPAGIINKWTGIGIAGKIYGVIGKSMKLPESATIDRIGSKLIFGGGIGGFFDPPSPAGRITTYAVTPNVRTQNIAQVRTQYARRMRNVGYVPPDSFDFSTGSAFRR