Scaffold Ga0207898_1000447

Overview

Basic Information

• Taxon OID: 3300025049
• Scaffold ID: Ga0207898_1000447
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3801
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.567
  • Long. (^o): -138.6676

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005131	Metagenome	411	Y
F032813	Metagenome	179	N
F040683	Metagenome	161	Y
F055789	Metagenome	138	N
F061266	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207898_10004471	F005131	N/A	QVKKSRPAIAAEIKDMPMKDFKVLWFVVQQALKVKKRNRLN
Ga0207898_10004473	F040683	GGAGG	MKKYRVWGYETQGYYIDLDANNKQDAHDKALDVNRDDWIEGNDGESTCFDINKKDMEVIKDE
Ga0207898_10004475	F061266	AGGAG	MFGTTKEKDLKLKRFMVMCKSKSGTTFYHEKSFFTLADADAYANLVRRQEDEQGNHFYLFEQSKHYGNGEDKK
Ga0207898_10004476	F055789	N/A	MSDPYLEKIAKEKHLHEYEKEITDAKKEIFALKQEIIHLKADVKYERELRLKGADYHKPKDYHSRFKLMMGVVRNEKKLTDLFDIVAEAQKRLKDE
Ga0207898_10004479	F032813	AGGAGG	MKTNEEGHVWLEKFQAYICPSYLNKTCTDFSDTDSESLYNLYQKHFPNAESNAIKSQIKDEVFNLIGKDNYKKKNLIKALRNKFPDIKSGVICRILKKYLSLRVLEIDRTYKTKPFVIKGKYCIN