NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1072067

Scaffold Ga0207905_1072067


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1072067 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003021Metagenome513Y
F013947Metagenome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10720671F013947N/AMNDRGPNDLERTIERLEKRVKELEADRETLKKDIDRLSEYNQ
Ga0207905_10720672F003021AGGAGMTKNLMIILILTLSLSHCSSMDYVNVGAAIFGGMKEKPNPIGAIKMLMKKDKKDE

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