Scaffold Ga0207905_1020206

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1020206
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1111
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041489	Metagenome	160	Y
F054421	Metagenome / Metatranscriptome	140	N
F073441	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10202062	F054421	AGGAG	MKITRMTSPIVDRVREELKIFLSDFVSTHEIEGIKVELGNCSYDEAQATFQLKVNVDGVATREQKALKMYAQLDGLDLEKEHPRFKLMEYHPKKRQYPYIYVDKTKPNVTYKGSTDWAIRHFGKVS
Ga0207905_10202063	F041489	AGGAG	MTILVADIKFYKVDDDGNEVLNKEGTHIQLYALKRDVRFKPLEYLCEDMDDDILEEILNENN
Ga0207905_10202065	F073441	N/A	FTVLSIGRMYMIKPINPIAKALAHHRKRKAIVPSKKDYNREKEKKNARQFYIPEDSSKKETSE