NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1013427

Scaffold Ga0207905_1013427


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1013427 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026043Metagenome199N
F053629Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10134271F053629GAGGMKMHCKNCGIKFYPSENNYVGYPYGTYHNHAPAHTRQFHSRWCWEKWTADNITAYTLWLQGMGNNDTTNATNNQSI
Ga0207905_10134273F026043GAGGMYTSVITDDEQNEVTLEYMTDHLENCRWFKITYYHKSQGRDVTRYGIWDSKCRAWRTKNDDIAICYQQVDDNGQLQGYRTATGITHISGKPARLDS

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