Scaffold Ga0207905_1010273

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1010273
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1645
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F007947	Metagenome / Metatranscriptome	342	Y
F016757	Metagenome / Metatranscriptome	245	Y
F037204	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10102732	F037204	AGGAG	MFDVQIYKDLSMYDFAMDVYQKAMHMKHDQGVEHYDVQEVIDHLQFILNTDQMILTTEE
Ga0207905_10102734	F007947	GAGG	MKLLDCHTILCLQNQMPDVGLDDLLVIGYLVGGLAVIIYLVMDALKEK
Ga0207905_10102735	F016757	AGGAG	MPKYEVKVEATTQRDIIVYAVSEYEAWIKAQIDMRGLVGGENTKVISSKEIDT
Ga0207905_10102738	F003073	AGGAG	MGKKLENMTQDERIAYWAAQREKERIQRRDRIAKLSLDQRVAVIKVYQLLDEILDTAMYPDLGGIKAITAYDLQELSDAKDRLRHEFNFDVREHG