Scaffold Ga0207905_1007450

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1007450
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1987
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016690	Metagenome	245	Y
F036313	Metagenome	170	Y
F037936	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10074502	F036313	GGAG	MRFNYGYQDMPSDIIANGNRYTLEKVTNLKEGSCILICKATNKTISSYVKWHDGLNDMAKREYEDTLLDIKEYTYINDKIREY
Ga0207905_10074504	F016690	AGGTGG	MSKIDGVIIFLLGIPVTLMAWITLGEADGYYMSDAVNEGFPMGIAFIGLIGAMGLTLLMVGLFIIHINRNN
Ga0207905_10074507	F037936	AGGAG	MIGNKIRKGKIWCKTNVKQNFGSNYNHKPLRSNWIQMVKDHDEPLEVYVSRKNELEAKMFKANLTKGKLSDVGLSDNSKAIQILNDMLNGV