Scaffold Ga0207905_1005757

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1005757
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2312
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010503	Metagenome	303	Y
F086186	Metagenome	111	N
F087770	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10057571	F087770	AGGAGG	MSLKEELKSTHTIQKACDFYMRTPKFCALGAKSQYDYNRNLAFACNTSVQGGKYLGNIKLKDIQFSHITVAYDHWRVKHGVRAANYIATCLSIVFNTARRHNALLSNPVS
Ga0207905_10057572	F086186	GGA	MQIPSNQYNLKHITPLSEERQRLMDAVEESQWEGDLHMADLLSTELYLVNQCITKGELYAPLF
Ga0207905_10057573	F010503	AGGAG	MGTKIDHEKLYKIQTYSFHDAVITVTEAFYSRTEIDPPTKPNKWGHTPSPTVHADGSEHYYKYNHWEEAIAVVPLHFDYEDNLTDAEKVKIILETVDALEIAYASYPDGEISISWSMRRNCINQ