Scaffold Ga0207905_1004473

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1004473
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023451	Metagenome	210	Y
F073762	Metagenome	120	Y
F074145	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10044732	F023451	AGGA	MKNEKWIGFKKPRFIGIDYDCKGNPLIDWQEQLKLKIDRDTVGYDFKVVAYRKVQTCMKD
Ga0207905_10044733	F073762	N/A	MKLKQLVKKINKENAPPEGWTEEAKEGAKQAAAIGLSLSDLDDSGDMAAEFNKIMDLDSDLYNE
Ga0207905_10044735	F074145	N/A	MKIRDIIEIEKHFTKNKKTPCDIAEALEEERYSESKGQDIKLGDMHLAHYIRRQLKDERADDETIKSQWKEIKNLKEFIRKNL