Scaffold Ga0207905_1004345

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1004345
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2731
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016393	Metagenome	247	N
F027052	Metagenome / Metatranscriptome	196	N
F028037	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10043452	F016393	GAG	MARGEINSVLGMTEGRFRTMIKSALRPCWRNSSRKTFIQSVRQRGINPATGRERFVLVCVDCGKEMGMSEKERRTKIDGTLEKRAKSVYEIDHVDGITPFTDVQTLETLTPHFRDMIYGKQEVVCVACHKVRTANQRKKSKLVNK
Ga0207905_10043453	F027052	GAG	MITDLDEARQYADTMLEALDVMGRAMYFCLNHPNASEFKAHRKLLIGAHERMGKDTTHFLSQIDEPDPPYEPTEEELSQHG
Ga0207905_10043454	F028037	AGG	MPCYRISYTRLDMPSTCGSIKTAHTEEEAIKCLTTGSKTKGYKLRKTNVPITITEIKEI