Scaffold Ga0207905_1004060

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1004060
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2846
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001855	Metagenome / Metatranscriptome	626	N
F006223	Metagenome / Metatranscriptome	378	Y
F022521	Metagenome	214	Y
F080235	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10040601	F080235	AGG	MIIDKNNEGAWRISDIINGYWESQVYYFYTKAEAIKKFRAFRKGLKV
Ga0207905_10040602	F001855	AGGA	MQPLRKDHVDHYKEFVRDEFSIASNRVEREISQQAQDKVEEKGDKFAQVIHKSLPDLIKDMAKKEKALIEFQQKKHSVENDLRNKAQVIADQISEIFNNNIKRNKWDMNRIDIEIHDDKDAVDYITKKIKKACYEEAEVQARAKHQLYHALENKKKKCLNILYTGSHIQPTLVELQKEMATANIQLDLPNSLLALPSK
Ga0207905_10040603	F006223	AGGA	MTKTIKLSDYFGEKEYTLEEFKKRWSSPTNEIWSFLIDHGNTEERNFGQKLAEEIFPKVAENAFNKFYEEQNKTKGIQC
Ga0207905_10040604	F022521	AGGA	MLEIHYEDLKQYKIDHMPPIMPEARKQADTLGHLLMSIGVNEITEKTVDEILFRTKFLDFCWGGRSYFVGDPSNKDLRQLFKNHIGLRIVITNRGFKNISTRHKFMVNQLQTIEERIEDQMKK