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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025048 Open in IMG/M |
| Scaffold ID | Ga0207905_1003220 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3253 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0003 | Long. (o) | -144.9998 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001839 | Metagenome | 628 | Y |
| F004629 | Metagenome | 430 | Y |
| F004990 | Metagenome | 416 | Y |
| F008915 | Metagenome / Metatranscriptome | 326 | Y |
| F011253 | Metagenome | 293 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207905_10032202 | F008915 | GAGG | MENNSITLDLYEMQSAAHLGILRCLESKKNKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKNNNSLIIRPKAKPNEFYILVIDEAPNFKILGFVNSTYVLGTEKFLTDFGLDRPPCYSLPPEKLTPIFLLKNGTWN |
| Ga0207905_10032204 | F004990 | GGA | MYGDPKKPCCVCKKGADLNERGKRYCADHYALYILGKSMSQIEKELGDKD |
| Ga0207905_10032205 | F001839 | AGGAG | VKYFEKFDKDLINNRALNSHEKLIYIICKSFENAPRGCRISHKYLMIRTGIKTVPTLVAALDRLTLFGMLARKQIENGTCHYVFDKPTMQEYILHNLNKRKKISLSKNKQQRDHNKARSYPNVINIKGVIK |
| Ga0207905_10032207 | F011253 | AGG | MNNRKAEIDKIIKDMVKNKSLPYANAVTKIKKDRKGYYQQKDIKLKSKSLSTDRFQQYLKAIQEEDNDSN |
| Ga0207905_10032208 | F004629 | AGGAGG | MIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFSLIDRLYGIGKDKDTYKDDDKPRLRIRLNSGQLQTYEFCILLLVKATEPQRDIIQLRNFPNRKSFRELRKFFMPDSYEKVRQDYYKALQELMSLYNSKGYKYISK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |