Scaffold Ga0207905_1002884

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207905_1002884

Scaffold Ga0207905_1002884

Overview

Basic Information
Taxon OID	3300025048 Open in IMG/M
Scaffold ID	Ga0207905_1002884 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3476
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0003	Long. (^o)	-144.9998	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001660	Metagenome / Metatranscriptome	655	Y
F051542	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10028842	F051542	GGA	MRMLIIIILLTGCSSKFDSFDPTTSALKWIIKNEKK
Ga0207905_10028847	F001660	AGGA	MADPAKYKSLSVPRNDWEQLGVLATKTNRTRSKMIGRLIRFFLDNKGVKSNGKVNKGS

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