Scaffold Ga0207905_1002278

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1002278
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3963
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023955	Metagenome	208	Y
F081757	Metagenome	114	N
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10022782	F023955	AGGA	MKVIHNIMLLRDNGDIEYHDVEGEWNEEGSGGPAFEPLRKLIDCRMIEVAYGMDTLSAKEYPMFLNEEGLYKDPIIVNEMATTMQKKWCDANRRMQTSTIVGNVAVDLGLNADSLTEVSTEMELQNNERKDNTTEA
Ga0207905_10022784	F098062	AGGA	MSTQKEMYGQTRDSVIAQFRKVKPLYAGKSNLYIMGILSDAQMMIDNKQYKTANQFINKAKLLLSTKCK
Ga0207905_10022788	F081757	AGGA	MIRYIVGLYMITCTIVMTSMLITSVAYATHGEEHGPGWHSSNCDSQPWQEDQAEVCNMMGLENKILEHHDYKIWEFDDSYIIMYKDQEVLQWDCILDSNTTPGNRFFCAVMMDYDYDRLESFIYE