Scaffold Ga0207905_1001967

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1001967
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4318
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10019674	F018962	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREHFTSTDVYEEEGDKNQYTYVKRFFFDLCDDLGLEIGSKFDKNVLDINAQWGSHYEPTAKDIEFKIKKLKSELKELEEWKNI
Ga0207905_10019675	F008190	AGGA	MEEHIEFNFIYSSDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGSLNEETVGGIQSYVESLSNKPITYKIYHSPDIIVNGTAELFDDIIEFE
Ga0207905_10019676	F004606	GAG	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGTILDSKWDPVNPLYQIRIIKFYDNMKFLKQHFFDMNFRHVFENRARKMILKADDFKTAKVLEDRLNEKDRERFYVVVESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISTRPFFKGPLSLDSTKEFDVRYKNSWADKFEKSNLDIDKYLNSLG