Scaffold Ga0207905_1001417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207905_1001417

Scaffold Ga0207905_1001417

Overview

Basic Information
Taxon OID	3300025048 Open in IMG/M
Scaffold ID	Ga0207905_1001417 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5162
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (92.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0003	Long. (^o)	-144.9998	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031126	Metagenome / Metatranscriptome	183	Y
F072851	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10014176	F031126	GAG	MTKEQAWKIIGNQPKWAIKNMVKALSMLTWLNTDDDKLRLKAGKICLKTNNPRYK
Ga0207905_10014179	F072851	GAGG	MIKLRQIKRIGLPPDWQFTMTNGDVIDIRVERRGANYRRYHIILPNPHGKMVFEKMAQLRDFLNKNYGGN

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