Scaffold Ga0207905_1001400

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1001400
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5197
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012239	Metagenome	282	Y
F052947	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10014003	F012239	GAG	MLIDNKFELEIPTHIAFTLYKNDYIDNLIISKVKKECRNKSNKKNEFIVSLEGFQNAIQKSTFLRAELKKTLDQDMLPNPNFKPNSIFFLQSIINRLPNLSMITFKMSDEKVFSRLIKVDGGREIVSFHFNIIEGTFDLTQILNREQLDTFNKRFMDVGIMKNKYLERVSYFYIKATILFDILSEMDEAQVLDAFDIITSVDPKIEEDDPILLVKTDYTPY
Ga0207905_10014006	F052947	N/A	MRAPFLKKLIKKFPNYMELGAAVKRYYDLRQSKLPKEECEEIILNSTFSIN