Scaffold Ga0207905_1001302

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1001302
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5425
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F008817	Metagenome / Metatranscriptome	327	Y
F036268	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10013022	F036268	AGGA	MKGINMKLTNCKDCEGKGYYTDVISSGLSDPKDPYHEPHIERCDSCKIFNDDVEAKEYHEKG
Ga0207905_10013027	F002282	AGGA	MMSEEDIKKYHDLVEELEMQKKNKNPVDDRGPNDLTKQIEILEFRNEKLHDYNQKLIEEVRSLRSKLYVKGN
Ga0207905_10013029	F008817	AGGAG	MKYTVVKRIPFAHSDDAIHVMKEAASYEEAMKYKVAGEMLESEDSSTKIEILINTDDAFDFTRKPLLLTDEAETKKAS