Scaffold Ga0207905_1001249

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1001249
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5552
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016326	Metagenome	248	N
F020600	Metagenome	223	N
F036433	Metagenome	170	N
F056069	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10012492	F016326	GGTGG	MMMMNKKNIAGEMGAKASQPAKRRQTVDPLERASQKMEGRMKGGDPKKAKRKSMMSSYGL
Ga0207905_10012495	F056069	GGAGG	MIKKSKTVNKRVMQKIVDKLAEGITLTEICQANDMPSYRSVTRAVQLDEDLWELYRKGRVQQAEFYTDRINQLAMSPLPDVDDQRKLHAEVNRRKLEIETLKWTTARNQPHGVRDKKEDAPEQQAITISWAGGDIDVKTDGA
Ga0207905_10012496	F036433	AGG	MVKKKKKAKPLNEARSRADHGTPEALRQADGVQYETVDGGRLGSVKRAYISRQTPMDRYRARGLVSQRQYDAAHAFFVLYDKTRQAGRVTSNYDRIIVDGGSGGGINEYAFSDYIALSQKLGTDYVSVVRAVVVECESAAGWAKRYRLPSRMGIERLRDGLDRLAKIMGVS
Ga0207905_10012498	F020600	AGGA	MTNNTDLFLPRTTQRLPADVLLPGQEADVGAMMLEYEREQAKRVRRQVLPCDRTYVRRQVDDTAIILLNEMRKAGPCTAKYLAERMSISTHKSANLIKSLTSANLAEKICMTVRGHVQKGSAKYRTGARERNDCWVYQAVAE