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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025048 Open in IMG/M |
| Scaffold ID | Ga0207905_1000569 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8361 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (95.45%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0003 | Long. (o) | -144.9998 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002593 | Metagenome / Metatranscriptome | 545 | Y |
| F010275 | Metagenome / Metatranscriptome | 306 | Y |
| F024924 | Metagenome | 204 | N |
| F046007 | Metagenome / Metatranscriptome | 152 | Y |
| F087763 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207905_100056913 | F010275 | AGGAG | MSNEINSTVMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPIPITMIEFLSQHCSQALSSVDYKQMAKESLNAQRNHYTKED |
| Ga0207905_100056915 | F087763 | GGAG | MAQMRVKDQDLIVEQVIKKIEATELDKFKAREDVQSIQSVIDTRIDLIQQLYYTYKQYEQNIKDDIKELIELVNDFQEVNGLKESNHYATMTGFSLSNVSMYGSPDVPEYKIDWKLPTNTKRELAVKLRMQTMSGDFDVYKLIDELTSEFSS |
| Ga0207905_100056916 | F002593 | GGAG | MSKLIYSKNGSATTKSIRSASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHENNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYSETSFLGRLWNRIRYGTPMSITA |
| Ga0207905_100056918 | F024924 | AGGAG | MNGKKRLNKSDRALAHDKFEQVQQAKNRIIVSFNSQEKAKRYLKSEGYRYQEVYSHKEDRAMLYKNFKNSWVKLAATFDYLNDNSMEMGTVWNIEIL |
| Ga0207905_10005695 | F046007 | GAGG | MTQYLDTVLNGKERLSEEELDKTVTSLYLHKSEEDNYFQTTYASGRVVKEFTDKRKKDEVTYG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |