Scaffold Ga0207905_1000533

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1000533
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8667
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F032332	Metagenome	180	Y
F057396	Metagenome / Metatranscriptome	136	Y
F091005	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_100053310	F008425	N/A	MAKKNITYKQFVAHMDKGNKVYMKKDKSWQKVWFWWESKKEKWFLNKAFDKRVDGRVEPEPSVWITAKQMEGHMDHMSRMGYKYHIDE
Ga0207905_100053313	F091005	N/A	MASIDLIPGFESFNENDKTIDNLNSMASTDLERIGDYADMIKDRMSQGQQLDAWMYSKISDSVKNLNSVHDTMDGKDGITEAEKHEFNPNETAERLKRREKQNIERFRAAQDREDPFAVQYYQLRISVDKLDLQKLKLMTQIHQLKNKFKK
Ga0207905_100053315	F057396	N/A	MVKVRVEYMNGKESLYDVEYPKAYIAKIIERENELMLDQKSVKQIYAGDKLIAKFNNGFLNELVLEKPKPKKTAGMGRYKGHTVPAGCDVGQYAVDEALKIAQDLKDQIAADEDWNEYQAEILHAQKMLKENVWVINKYTMNHTGGNVNLNYIPMSL
Ga0207905_10005337	F032332	N/A	MESNSGSGFSDDFIRSLLLTLEQTDYNEFMDLSYHVMMQSPSSVLKRKDSIEVKLNSIDKMIKYFEEIEAYEKCTNLQRLKSMLFINATPDEDSTIH