Scaffold Ga0207905_1000231

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1000231
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14852
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F014018	Metagenome / Metatranscriptome	266	Y
F016148	Metagenome / Metatranscriptome	249	N
F022198	Metagenome	215	N
F027052	Metagenome / Metatranscriptome	196	N
F028037	Metagenome	193	N
F040631	Metagenome	161	N
F044196	Metagenome	155	N
F062252	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_100023111	F028037	AGG	MPCYRISYTRLDMPSTCGSIKTAHTQEEAIKCLTTGSKTKGYKLRKTNVPITITEIKEI
Ga0207905_100023113	F016148	N/A	MIIKTATYPYGPAKHMDADTLVQRLQVISGQQRFVDDYVGSLCDGDEYWISERVSDKPKKRTGDQILTWMEENGIDPEFQYDVDMRPESVILYSKHGQSLVTYPYDKGCLREAAEFVMDQKEHGDS
Ga0207905_100023115	F014018	N/A	MKQDLHRTPKHERTQLEQDFRDKASASLRTSRKCEYDSASALYYGQYIGNKYAAVSVRTAHRYGYMHNMTKEHYDIVSETKAESYTNKLMRGYEALEEMSKDSL
Ga0207905_100023118	F022198	AGGAG	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIAPGRCLAIHENGNIAPLRLKESY
Ga0207905_100023119	F009110	AGAAG	MITSAVLYMESLKDKVPPADEDDIIVKHGTPHMRTLGIDPHEAVKAVDKLRAQGMTARDAYGQVGMTQSQYYKTKKGVTNRK
Ga0207905_100023120	F044196	N/A	MEDITNKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQLNK
Ga0207905_100023121	F006684	N/A	MNKIIISYIIASALALGLLNHAINKAQGNIETLAEVLVHHADTLEDHRSVLLQMIDDRALPYM
Ga0207905_100023125	F062252	N/A	MKTKEAIQTIIQTRDFCGNEAEALRDWEAENGTLSEHQRAQVWQGVKEEWKLWQLKANVQHALTDAERLKAFSDIENA
Ga0207905_10002315	F040631	N/A	MNDKALTKYRQVTGACARFIERHQDKELTEEEAQTLINTSRVSRSESDWTAIKDFQDECCRTVYKCTKKGLIEPATDYVPSHPTL
Ga0207905_10002319	F027052	N/A	MTTDLDEARQYADIMLEALDVMGRAMYFCLNHPNSSEFKAHRKLLIGAHERMGKDTTHFLSQIDEPDPPYEPTEEELSQHG