Scaffold Ga0207905_1000169

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1000169
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18509
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F002682	Metagenome / Metatranscriptome	537	Y
F006589	Metagenome / Metatranscriptome	369	Y
F010275	Metagenome / Metatranscriptome	306	Y
F022888	Metagenome / Metatranscriptome	212	N
F024924	Metagenome	204	N
F038424	Metagenome	166	Y
F087763	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_100016916	F024924	GGAGG	MTGKKRLTKSQRSINSAKFDDIKSSKHRIIVSFNDQEKAKRYLRSRGYRYQEIYSHKEDRTLLYKNFKNSWVKLASTFDYLNDNTMEMGTVWNIETI
Ga0207905_100016918	F002593	GGAG	MSKLIYSKNGSATTKSIRSASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSIAS
Ga0207905_100016919	F087763	GGAG	MAQMRVKDQDLIVEQVVAKIEATELDKFQAREDVKAIRDVIDMRIDAIQQLYYTYKQYEQNIKDDIKELVELVDNFQEVNSLKQSNHYANSTGFRLRNVSNYGSPDVPEYEVDWKLPANTKRELAVKLRMQTMSGDFDVYKLIDELTSEFSS
Ga0207905_100016921	F010275	GGAG	MSNEVNSTVMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLNAQRNHYTKED
Ga0207905_100016931	F038424	AGGAGG	MGWTKHLMYIVIIIVLQLINFHAVGYTQHKSDWCDGFYKQYKEGL
Ga0207905_100016934	F022888	AGGA	MNYIYERMMTEGDTAIFDRAELQKFEDYVSSNYETFYDNKASYEVKKDGEKFLVTLFENPVITMEDILLDIRD
Ga0207905_10001695	F006589	GAGG	MLKELLEKKVNSMINTNDLTDMQVWGVMGLIGFISAFIIMWII
Ga0207905_10001697	F002682	AGGA	MGKQIGSDEKPITFTSPIYKNTHGSKGANPRPGFYTQDYRDNWDRIFGKKKTEEKNNDNN