Scaffold Ga0207905_1000087

Overview

Basic Information

• Taxon OID: 3300025048
• Scaffold ID: Ga0207905_1000087
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57049
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (28.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0003
  • Long. (^o): -144.9998

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022183	Metagenome / Metatranscriptome	215	Y
F024582	Metagenome / Metatranscriptome	205	Y
F036969	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207905_10000871	F024582	N/A	MKCTHNTLTHLLGAWDRLEVIGINPDNHKSILTSTLLPHRNEFGKRQVKIAIEYRIEDGFARCAPYIYAFLVMYDQNGHRRSVIKNGSWGCHGEDMMEFKLWFSKKMRSAHDMQEERIENAQDRITDFLS
Ga0207905_100008730	F022183	N/A	MAFLFQSKSWTITGEKEFENHFTLLNPTLSVMQVSVHEENVYISMRAVENGGVFVHNLNVQYNNDAGETDLDVIVDAAVDQAFPEATVV
Ga0207905_10000876	F036969	GAGG	MEVSVAGFESLSRSNFFNLFNMNTMFSTHAVRLAYGRTLMDGGSSLLTSDGYDFEVPYKGFMVGGLSGETKIPLDICDANTFHTIWHKYAVEVRKLIKESRLSGVSYAVGTWIDNDCIVFDVSEKVATSRSAYALCVERNEDAYYDVDERKSVFIEKDNDNAEA