NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207902_1010746

Scaffold Ga0207902_1010746


Overview

Basic Information
Taxon OID3300025046 Open in IMG/M
Scaffold IDGa0207902_1010746 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-45 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0454Long. (o)-144.8791Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000319Metagenome / Metatranscriptome1307Y
F012881Metagenome / Metatranscriptome276Y
F041444Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0207902_10107462F041444N/AMTKSKEEIKNLYKVVDKLEQRISTLEKVIARHQLRVADIVTYIDKKAEQHGS
Ga0207902_10107463F000319N/AMFKDLLLIILGAGLSSAYFYFQEYRRKQKEKQQERLNQIK
Ga0207902_10107464F012881GAGGMFGKNKNAFLTTNLIVKVRKHKNDQPYFSFHNTPAIADKENAIATAEKLNELVKLEPQETDWQTEYYSVPLTL

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