Scaffold Ga0207902_1004195

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1004195
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F064626	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10041953	F004908	AGG	MERQEHQLISTKKITDLFQVDEGSINPKTGLTEKPSWYVRFEDMTDRVVFRSKMLELLSMGFRKTVENFKAGKASTNVGGEARFWVVVFQDYEVRLQTKDQIMGVVTEGHKHRDDKDNAQFERNGSKEEIILE
Ga0207902_10041954	F064626	AGGA	MKELKKVTEKIKKVLIKAERDGEEFPWIVDQLSFIKMYDVGLPITMVLGLIDEFVEDVEERKRIKALEGFDKEHVQKFYDKVNVKWNDRNIN