Scaffold Ga0207902_1003829

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1003829
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1412
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F056142	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10038292	F006818	AGGTGG	MAGPPQMVTYSRKPQQVEEQPEREVAPAPNILHRQPVAQRMMPTAEQMSDDELDLFVQRLTMRHKRLSRKWMGLRRKHGKDECPYCGMNTGGGFCKIHQRDYDEYLGALSTRQNRSFGL
Ga0207902_10038295	F004336	GAG	MKFIRNMLFTTSRYPSTMGAGGQQDVDFCRYIEWMWFKRCMWLLGISLAFGGLGLYVGYYYDEVVLEYGMMVWGVAWLYNGFLLFVMAISMILAMLKALIVKAFISPEVQVGQAATRTAQMMRKGGL
Ga0207902_10038296	F056142	N/A	VLAVHSLEALVDEEGFAQKAYIEFHDDKLDFKPNFRRITIYTYHPKWIPMPEGAEPIGYEVAYQLSRDFKRDIYEKMDSQKNAYVDVVRP