Scaffold Ga0207902_1002202

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1002202
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1685
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011305	Metagenome	292	Y
F034595	Metagenome / Metatranscriptome	174	Y
F038267	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10022022	F038267	AGGGGG	MSVRGFIDINEYSWKKGKKTASMCYPGMCGSMQGTIKWAHKYVKKDTDFALKVLDLAIKEREKVDNVIKRFNRRFN
Ga0207902_10022023	F034595	GGA	LTYPIVYRIMWAMNINDRLDNLSKGELIGLIKEIKITCESNRNSWHKTRRSMEGVCYFILRMIKGEI
Ga0207902_10022024	F011305	GGAGG	MKFIILLLTLFMVGCYGMSMKPHKTSVTYGVADTEKDNGKDSAKESFTIKQDFIWE