Scaffold Ga0207902_1001886

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1001886
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1766
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025049	Metagenome	203	Y
F043344	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10018861	F025049	N/A	LRRKQGIEDARNERELREAHDQMQSSFVSEFESGELVH
Ga0207902_10018862	F043344	GGAG	MGDRVSVSFHQKNDWYVNKVKEEHIDESPALFHHWGGTQFPKMAFDWFKSIKKKYGKGGGDPFTRMEPRNLMVQFIAHLRNHADLRYSTLNTSKEESDWDIDPELICYSIYLGKDGNDGDNSDNGHYTIDVDAGKMFDDKGQSIG