Scaffold Ga0207902_1001858

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1001858
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032038	Metagenome	181	Y
F081756	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10018585	F081756	N/A	MYNIILYIGIFLMAFGFILFIVSEMDKRRKDRELFYQQQLTKSFERNKNE
Ga0207902_10018586	F032038	GAGG	MENKKDKNIWLVIEKYVYSNSTPSHSVKKTATSLEEAVEFKTALEKLNDQKDVSYFLASDVDTVLNNVAEHHNKSVENGTYYDNHPEIDRPDF