Scaffold Ga0207902_1001796

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1001796
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1800
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10017961	F009536	N/A	EEIKSNLENPKSYTRLFVKIIEEIDSMKVILPKFTALKNSILKINKKAHSKIVDEMKHEVPKTQSTLSAGDIDRWLLSAKKGEKLIYYTGSTFDHRSVKEESVFRKAKNLTMDYDNVPFKNKKYQYRGSIRGEWGCNYKNTITLVQQKVTALQRDKIWDEEKKSYIPGNIISYPIYNYIMIKQ
Ga0207902_10017963	F013896	GGTGG	MICDKCNGNGFTIVKGETIQCKKCLSSGELSETMTPPKYLDDDLTNIYQTLYEESLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMKKILETDVQPYKKETLQ
Ga0207902_10017964	F080498	AGGA	MIKKIIIYHLLLFFIVLLFSCAPRMHTVAPKPIEKDNKFIEHLLRNIITQGLDF
Ga0207902_10017965	F045144	AGGA	LTWNKGLYSHLNRTGKTIRKYPDGNDPLKQKLFGKTRVCTKCGKRKSTLKFHWKTDYANSNNVVKRLQRFCGVCRVKQDNEKYSATAEAYLKRRIATLKSSCYRHRGRRKVLLTSDQFYNVWKKQRAETGLQCPLSGETMTHTLGRGQVLTNISVDRIDSDKDYIKSNIQFVCLMANLMKHKYDNKNLLSWSKK