Scaffold Ga0207902_1001256

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1001256
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2014
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10012564	F009536	N/A	MQKEVMKQALNLMPGQLREEIKNNLENPLSYTRLFVKICEEIDSMKVVLPKFTELKNAILKINKKTHSKTTEEMKHSVSKTQSTLSVRDIEYWLKTAKKGDQLIYYTGRTLDHPKSVKEEAVFRKAQNLAMDYDSVPFKNKKYQYRGSVRGEWGCNYKNIITLVQKKVANLQRDKMWDEEKKSYVPGNIISYPIYNYIMIKI
Ga0207902_10012565	F000567	N/A	MKEQLLKITQKITTWHVRLFEYLTLKSKTSVFFTWLLVFICLYEIFEHIVIPLALIWWGF
Ga0207902_10012566	F013896	GGTGG	MICDKCNGNGFTLVKGETIQCKKCLSSGELPETITPPKYLDDDLTNIYQTLYEASLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILETDVQPYKKETLQ
Ga0207902_10012567	F080498	AGGA	MIKKIIIFHLLLFFVVLLFACVPRVHTVAPKPMEKDNQFMTQLLRNIITQGMDF