Scaffold Ga0207902_1000325

Overview

Basic Information

• Taxon OID: 3300025046
• Scaffold ID: Ga0207902_1000325
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3192
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0454
  • Long. (^o): -144.8791

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F007035	Metagenome	359	Y
F076177	Metagenome	118	Y
F081433	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10003254	F007035	N/A	MYYILEDVHNSFYTEAIANDEFPSLQAAEKKLQALRELKPEGKYFIVTRLQA
Ga0207902_10003257	F000423	AGGA	MKLNKAIFYIKYYAKKHDCIIERKATLDENCFEGHHKKFGYPYKKYIDVWATEEINNGQPQYRTASKKWEINDTQTI
Ga0207902_10003258	F081433	GGA	MIPKQFKKLPHYLQPRIISAVAFIHTASPDINLAQERIAKVAKALSEKELKYVMSLLVFDKLLDMVKDSDEFKNFSSSTRTMH
Ga0207902_10003259	F076177	N/A	MIQITDDINFIKKLPLDEQKEYLKAYLKADQLKLKNRV