Scaffold Ga0207902_1000324

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207902_1000324

Scaffold Ga0207902_1000324

Overview

Basic Information
Taxon OID	3300025046 Open in IMG/M
Scaffold ID	Ga0207902_1000324 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3194
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0454	Long. (^o)	-144.8791	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002612	Metagenome / Metatranscriptome	543	Y
F020190	Metagenome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10003242	F020190	AGG	VTANKTEKKYGQMVSSQTILDDVFRFAEKYKNDPMAISASLMVVAKTIYLHRLGPEQTQLMIHMFADNMDQPYVEKVTLH
Ga0207902_10003247	F002612	AGAAGG	MDAVRLAERIFKIIRARQTQINEIVTSNQVKDWNDYQNHLGQLETLNYIEQELSDLLKKQEQDEHSNFTETRR

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