Scaffold Ga0207901_1022019

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1022019
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 872
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F043075	Metagenome	157	Y
F076175	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10220192	F043075	GGTGG	MTDISEWIKMFGINGGVLAAVSLTDIELILKIMLLILTCIWSCLKIIKLTKE
Ga0207901_10220193	F010273	N/A	MKEKLKSRKLWMAIGGLLTVMATEWFNLSPELSEQVIGAVIIIVPAYVGSQSIVDAMKEYAAKKK
Ga0207901_10220194	F076175	N/A	MILEALKGLAALPKLVEAVERIGDKLDDKAALERLGDKRNRNRAAIDGVLESSSGQRGEIDRSPAVSGGDTGGS