Scaffold Ga0207901_1021852

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1021852
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 875
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077398	Metagenome / Metatranscriptome	117	N
F099428	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10218521	F099428	GAG	VATKLNVDPGSDIGKKLWDRHQANEYTHVNNYKEAICINCFTKDATSATIADICGECAGK
Ga0207901_10218522	F077398	AGGAGG	MTVKKSKSKEITKAVVKVKEGKVEVYTKAYNDTIKRAGNVYSANYSLIDETIVDIKKMSRKVSTSDYAANNVYLILQDALKKITLAEK