Scaffold Ga0207901_1009891

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1009891
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1335
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013822	Metagenome	268	Y
F052872	Metagenome	142	N
F070575	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10098911	F052872	N/A	MNKNYIVAFISKDKDIILEPLAEFNGDTMFFKSKYEATAYISRLYINSGHPDKEPFSTDDGLSIIRVQ
Ga0207901_10098913	F013822	AGGAG	MLIQTETDVLRRNVKDLQIQLRDAHIRIKELNEKLDDVRKRFGINKEYTTDDGWAMPVENPDASHIKEKKDDK
Ga0207901_10098916	F070575	N/A	MPKHLWNIEFDRVYKEILREYIDDGYDIAEAKTLSKKDTKEIMQEQLDFVEELYDNTLN