Scaffold Ga0207901_1008462

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1008462
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1459
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C246 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020443	Metagenome	224	Y
F032047	Metagenome	181	Y
F100973	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10084622	F032047	GAG	METDAAEEALRNFGAQSGLAVLVEQYVWYFVVAFALLFVRDSVTNAMAGIAMFLGSDYNEDMVCYVHTNGTRRPARITKTTLFSTSFYLYEVKDGQIKGGTLLTVPNSELKSLRIERPLDTLKLPEE
Ga0207901_10084623	F100973	GAGG	MAPRLPRDPAKIGSFSELRSHYTEAIKQLDECKQMKGITNEVLRTTADQVRGAKSEAKKARGQVVALTKREHAKSKEKSAAAYATTAATTLIIGYQIVEVSGGWGKWAPVFQHEATIGVLQVIIGSVLAFAMRPLH
Ga0207901_10084624	F020443	GAGG	MKDLKIKLGIGKAEITKTGKGAMVGGVGALSYSIISGMGYMPDAFSSADVMPYVVAGLSTVINFVRHFFTDHLS