Scaffold Ga0207901_1005763

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1005763
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1809
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F064782	Metagenome / Metatranscriptome	128	N
F067816	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10057635	F067816	AGGA	MTMDVYYDDKTGSIPAVEVDIILVLADYESVDLSAPSARREIARNVHRMLLAKNYVIRQKQGSGT
Ga0207901_10057636	F047715	N/A	MLYGKNKVVELDMYIDYCPTCTTDKDEPILLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEREHGLKSRSGTKEY
Ga0207901_10057637	F064782	GAG	MDLKAEVVLKNIRKEIKKIRDRNRKMKNHPYAENTMVMIGLMKAVNIVEGLRDEEMEKLIDWKAEQKRIVSN