Scaffold Ga0207901_1004488

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1004488
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2101
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F019487	Metagenome	229	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10044881	F019487	GGTGG	MMNDKDIKEYHDLDKLNQYQPLPSGLKVEDSGISGQGLFTTRRLVIGTPLGISHYR
Ga0207901_10044882	F045144	GGA	LSWSKGLYYHINRTGKTIRKYPEGNDPLKQKLFGKTRQCTKCGKRKSTLQFHWKTDYRYKDKVTKRLQRHCGVCRVTQDNEKYSATAEAYLKRRIGTLKSTCHKHRGRKKVLLTSDQFYNVWKKQRDKTGLQCPLSGETMTHVLGRGQVLTNISVDRIDSDKDYIKSNIQFVCLMANLMKHKYDNKNLLNWSKKIVNNLERK
Ga0207901_10044883	F080498	N/A	MIKKIIVYHLLLFFVVLLVACAPRMHVAPKPTEKDNKFMVQLLRNIITQGMDF
Ga0207901_10044885	F000567	N/A	MKEQLLKITQKITTWHVKLFEYLTLKSKTSILFTWLLVFICLYEIFEHIVIPIILIWWGF
Ga0207901_10044886	F009536	N/A	ALDLMSGPLKEEIKDNLENSRSYTRLFVKISEEIDSMKVKLPVFTTLKNDILEINKKTHSKITEEIKYSVPEAQSTLSVKDIERWLERAKKNDQLIYYTGRTLDHPKSVKEESVFRKARNLAMEYDNVPFKNKKYQYRGSVRGEWGCTYKNIITLVQKKVANLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI