Scaffold Ga0207901_1003000

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1003000
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2728
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10030002	F018815	N/A	MNVSLEKVTDFFKPFLLKDIIIKTDKKVLKRGRLKIFQVKQYYINLTLEYNDANKSYEIPYPYNTSYHNNVGILNYHLSSFIPNKQINRVKFLDSSSKSKLYDNLVYILTSEDDSV
Ga0207901_10030003	F018622	N/A	MIIQKAALDSLLLDNVCEIRFARRIIKPGQTATRRMLCTKSLSLLNSVNGRISLNYFPPKGPPKAYLGPDHLAVAWDILMQNYRNINMNQCDLIQEIPANDDFWVYFNENIYPMSAEQKSNFMNS
Ga0207901_10030004	F014794	N/A	APTKSLIDLTKTGRGDFGLEDYDLTFLFDDILLIQYVDLTEDGNEGGETIERNGILIPTNTLTRAWRKGRVILAGPDAKYAKEGDIVLFPNNMGVTISGVTIPEKGQVDKGIFLNEERMFGICKPKDDNTKSSS