Scaffold Ga0207901_1002808

Overview

Basic Information

• Taxon OID: 3300025045
• Scaffold ID: Ga0207901_1002808
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-46 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2854
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Melainabacteria → Candidatus Gastranaerophilales → unclassified Candidatus Gastranaerophilales → Candidatus Gastranaerophilales bacterium HUM_18 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.9991
  • Long. (^o): -144.9989

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026716	Metagenome	197	Y
F066235	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207901_10028084	F066235	N/A	MPKGPKDDLNSEEDDELREMVEQALKQSLKEKKVFKRRQDLAQRISNIIAEYLDSYILLGFDFQGRHLDIKSASTPQQIEALNSFLLKYFAAEVQSIKGLNPGPDEIL
Ga0207901_10028085	F026716	AGG	MKYYKREVYAVQTGDYVGQMFAIVDPTEDAIGCLSLPKMENIEVPIESFENGRNNDIIKFVEKLPKKVYSVVEAQYKKNEDPNNRRKQLNTPNVSYSESTVEEDEDTLRLSGK