NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207889_1021654

Scaffold Ga0207889_1021654


Overview

Basic Information
Taxon OID3300025042 Open in IMG/M
Scaffold IDGa0207889_1021654 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-47 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)601
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0008Long. (o)-145.0003Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081756Metagenome / Metatranscriptome114Y
F089040Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0207889_10216543F081756GGAVFNIIVYIGILLMVLGFILFIISEMEDRRIDRELFRQQQLTKSFERNKNE
Ga0207889_10216544F089040GGAGMDKLQVEIIKKVLMLSTKKELQIVRDNVCDAISRECDQDDHEQELFKQWKENQASV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.